Publications

• J. Ohnuki, Y. Arimura, T. Kono, K. Kino, H. Kurumizaka, and M. Takano, "Electrostatic ratchet for successive peptide synthesis in nonribosomal molecular machine RimK", J. Am. Chem. Soc., 145, 15963 (2023)
• D. Parkin and M. Takano, "Coulombic organization in membrane-embedded rotary motor of ATP synthase", J. Phys. Chem. B, 127, 1552, (2023).
• Y. Kamiyama, D. Parkin, and M. Takano, "Torque generation mechanism in Fo motor of ATP synthase elucidated by free-energy and Coulomb-energy landscapes along the c-ring rotation", Biochem. Biophys. Res. Commun., 651, 56, (2023)
• D. Parkin and M. Takano, "The intrinsic radius as a key parameter in the generalized Born model to adjust protein-protein electrostatic interaction", Int. J. Mol. Sci., 24, 4700 (2023)
• J. Noji, A. Yoshimori, J. Ohnuki, and M. Takano, "Effects of solvent density distribution and dipole–dipole interaction on a polarization fluctuation near an electrically neutral surface", J. Phys. Soc. Jpn., 91, 114602 (2022)
• H. Sato, M. Sugishima, M. Tsukaguchi, T. Masuko, M. Iijima, M. Takano, Y. Omata, K. Hirabayashi, K. Wada, Y. Hisaeda, and K. Yamamoto, "Crystal structures of hydroxymethylbilane synthase complexed with a substrate analog: A single substrate-binding site for four consecutive condensation steps", Biochem. J., 478, 1023 (2021)
• Y. Mizuhara and M. Takano, "Biased Brownian motion of KIF1A and the role of tubulin’s C-terminal tail studied by molecular dynamics simulation", Int. J. Mol. Sci., 22, 1547 (2021)
• M. Iijima, J. Ohnuki, T. Sato, M. Sugishima, and M. Takano, "Coupling of redox and structural states in cytochrome P450 reductase studied by molecular dynamics simulation", Sci. Rep., 9, 9341 (2019)
• J. Ohnuki, T. Sato, T. Sasaki, K. Umezawa, and M. Takano, "Reply to the Comment on "Hydrophobic surface enhances electrostatic interaction in water"", Phys. Rev. Lett., 123, 4, 049602 (2019)
• T. Sato, T. Sasaki, J. Ohnuki, K. Umezawa, and M. Takano, "Hydrophobic surface enhances electrostatic interaction in water", Phys. Rev. Lett., 121, 20, 206002 (2018)
• H. Ozawa, K. Umezawa, M. Takano, S. Ishizaki, S. Watabe, and Y. Ochiai, "Structural and dynamical characteristics of tropomyosin epitopes as the major allergens in shrimp", Biochem. Biophys. Res. Commun., 498, 119-124 (2018)
• M. Takano "Orchestrated electrostatic interactions among myosin, actin, ATP, and water", in "The Role of Water in ATP Hydrolysis Energy Transduction by Protein Machinery (M. Suzuki Ed.)", Springer, 113-122 (2018)
• T. Sato, J. Ohnuki, and M. Takano "Long-range coupling between ATP-binding and lever-arm regions in myosin via dielectric allostery", J. Chem. Phys. 147, 21, 215101 (2017)
• 高野光則、“分子機械のブラウニアン･ラチェットとアロステリック機構”、『分子マシンの科学』(化学同人)　(2017)
• J. Ohnuki, A. Yodogawa, and M. Takano, "Electrostatic balance between global repulsion and local attraction in reentrant polymerization of actin", Cytoskeleton. 74, 12, 504-511 (2017)
• Y. Mizuhara, D. Parkin, K. Umezawa, J. Ohnuki, and M. Takano, "Over-destabilization of protein-protein interaction in generalized Born model and utility of energy density integration cutoff", J. Phys. Chem. B, 121, 4669-4677 (2017)
• T. Sato, J. Ohnuki, and M. Takano, "Dielectric allostery of protein: response of myosin to ATP binding", J. Phys. Chem. B, 120, 13047-13055 (2016)
• J. Ohnuki, T. Sato, and M. Takano "Piezoelectric allostery of proteins", Phys. Rev. E, 94, 012406 (2016)
• K. Umezawa, J. Ohnuki, J. Higo, and M. Takano "Intrinsic disorder accelerates dissociation rather than association", Proteins, 84, 1124-1133 (2016)
• Q-M. Nie, A. Togashi, T.N. Sasaki, M. Takano, M. Sasai, and T.P. Terada, "Coupling of lever arm swing and biased Brownian motion in actomyosin", PLoS. Comput. Biol., 10:e1003552 (2014)
• 高野光則、 “アクチン・ミオシン結合の計算機実験”, 日本生物物理学会誌, 52, 196-197 (2012)
• K. Okazaki, T. Sato, and M. Takano, "Temperature-enhanced association of proteins due to electrostatic interaction: A coarse-grained simulation of actin-myosin binding", J. Am. Chem. Soc, 134, 8918-8925 (2012)
• K. Umezawa, J. Ikebe, M. Takano, H. Nakamura, and J. Higo, "Conformational ensembles of an intrinsically disordered protein pKID with and without a KIX domain in explicit solvent investigated by all-atom multicanonical molecular dynamics", Biomolecules, 2, 104-121 (2012)
• 高野光則、“ダイナミックな蛋白質―計算機シミュレーションの挑戦”、複雑系叢書『コンプレックス・ダイナミクスの挑戦』（共立出版）、pp.39-76 (2011)
• M. Takano, T. P. Terada, and M. Sasai, "Unidirectional Brownian motion observed in an in silico single molecule experiment of an actomyosin motor", Proc Natl Acad Sci USA, 107,7769-7774 (2010)
• H. Morita and M. Takano, "Residue network in protein native structure belongs to the universality class of a three-dimensional critical percolation cluster", Physical Review E, 79, 020901(R) (2009)
• H. Yamasaki and M. Takano, "Simulated rotational diffusion of Fo molecular motor", Physics of Self-organization Systems (S. Ishiwata & Y. Matsunaga eds.), World Scientific, 57-64 (2008)
• K. Omagari, H. Yoshimura, T. Suzuki, M. Takano, M. Ohmori and A. Sarai, "Delta-G-based prediction and experimental confirmation of SYCRP1-binding sites on the Synechocystis genome", FEBS Journal, 275, 4786-95 (2008)
• K. Hayashi and M. Takano, "Temperature of a Hamiltonian system given as the effective temperature of a non-equilibrium steady state Langevin thermostat", Physical Review E, 76, 050104(R) (2007)
• H. K. Nakamura, M. Takano and K. Kuwata, "Modeling of a propagation mechanism of infectious prion protein; a hexamer as the minimum infectious unit", Biochemical and Biophysical Research Communications 361, 789-793 (2007)
• K. Hayashi and M. Takano, "Violation of the fluctuation-dissipation theorem in a protein system", Biophysical Journal, 93, 895-901 (2007)
• H. K. Nakamura, M. Takano, "Temperature dependence and counter effect of the correlations of folding rate with chain length and with native topology", Physical Review E 71, 061913-1-7 (2005)
• H. K. Nakamura, M. Sasai, and M. Takano, "Scrutinizing the squeezed exponential kinetics observed in the folding simulation of an off-lattice Go-like protein model", Chemical Physics, 307, 259-267 (2004)
• M. Takano, J. Higo, H. K. Nakamura, and M. Sasai, "On the model granularity to simulate protein dynamics: A biological physics view on biomolecular computing", Natural Computing, 3, 377-393 (2004)
• H. K. Nakamura, M. Sasai, and M. Takano, "Squeezed exponential kinetics to describe a non-glassy downhill folding as observed in a lattice protein model", PROTEINS: Structure, Function, and Bioinformatics, 55, 99-106 (2004)
• K. Omagari, H. Yoshimura, M. Takano, D.Y. Hao, M. Ohmori, A. Sarai, and A. Suyama, "Systematic single base-pair substitution analysis of DNA binding by the cAMP receptor protein in cyanobacterium Synechocystis sp PCC 6803", FEBS Letters, 563 (1-3), 55-58 (2004)

Publications before 2003